Control file

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Control Files contain a sequence of plop commands to be executed. It is either interpreted by the executable or accepted as input.

Example (allowing for either option):

   datadirectory /home/jane/plop/data
   file logfile janes_plop_job.log
   energy parameters solvent vacuum
   # this comment will be ignored, as will the following command
   #load pdb /home/jane/old_pdb_files/protein.pdb
   load pdb /home/jane/pdb_files/protein.pdb
   minimize residues all residues verbose yes
   write pdb protein_minimized.pdb

[edit] See Also

Running Plop

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